plprot: a comprehensive proteome database for different plastid types.
نویسندگان
چکیده
Different plant plastid types contain a distinct protein complement for specialized functions and metabolic activities. plprot was established as a plastid proteome database to provide information about the proteomes of chloroplasts, etioplasts and undifferentiated plastids. The current version of plprot features 2,043 protein entries and consists of two modules. Module one contains a BLAST search option and provides comparative information on the proteomes of different plastid types. The second module contains four searchable databases, three for each individual plastid type and one comprehensive composite database that provides the results of plastid proteome analyses from different laboratories. plprot is accessible at http://www.plprot.ethz.ch.
منابع مشابه
Proteome dynamics during plastid differentiation in rice.
We have analyzed proteome dynamics during light-induced development of rice (Oryza sativa) chloroplasts from etioplasts using quantitative two-dimensional gel electrophoresis and tandem mass spectrometry protein identification. In the dark, the etioplast allocates the main proportion of total protein mass to carbohydrate and amino acid metabolism and a surprisingly high number of proteins to th...
متن کاملProteome analysis of bell pepper (Capsicum annuum L.) chromoplasts.
We report a comprehensive proteome analysis of chromoplasts from bell pepper (Capsicum annuum L.). The combination of a novel strategy for database-independent detection of proteins from tandem mass spectrometry (MS/MS) data with standard database searches allowed us to identify 151 proteins with a high level of confidence. These include several well-known plastid proteins but also novel protei...
متن کاملPPDB, the Plant Proteomics Database at Cornell
The Plant Proteomics Database (PPDB; http://ppdb.tc.cornell.edu), launched in 2004, provides an integrated resource for experimentally identified proteins in Arabidopsis and maize (Zea mays). Internal BLAST alignments link maize and Arabidopsis information. Experimental identification is based on in-house mass spectrometry (MS) of cell type-specific proteomes (maize), or specific subcellular pr...
متن کاملUpdate on Plastid Proteomics in Higher Plants Plastid Proteomics in Higher Plants: Current State and Future Goals
Plastids are plant cell organelles with many essential functions in plant metabolism. Among these are photosynthesis, amino acid and fatty acid biosynthesis, as well as the synthesis of several secondary metabolites. All plastids originate from undifferentiated proplastids, which are restricted to meristematic tissues and undifferentiated cells. Depending on the tissue, proplastids can develop ...
متن کاملRegulatory Shifts in Plastid Transcription Play a Key Role in Morphological Conversions of Plastids during Plant Development
Plastids display a high morphological and functional diversity. Starting from an undifferentiated small proplastid, these plant cell organelles can develop into four major forms: etioplasts in the dark, chloroplasts in green tissues, chromoplasts in colored flowers and fruits and amyloplasts in roots. The various forms are interconvertible into each other depending on tissue context and respect...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید
ثبت ناماگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید
ورودعنوان ژورنال:
- Plant & cell physiology
دوره 47 3 شماره
صفحات -
تاریخ انتشار 2006